nextclade

open-source

Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

How to download and setup nextclade

Open terminal and run command

git clone https://github.com/nextstrain/nextclade.git

git clone is used to create a copy or clone of nextclade repositories. You pass git clone a repository URL.
it supports a few different network protocols and corresponding URL formats.

Also you may download zip file with nextclade https://github.com/nextstrain/nextclade/archive/master.zip

Or simply clone nextclade with SSH

[email protected]:nextstrain/nextclade.git

If you have some problems with nextclade

You may open issue on nextclade support forum (system) here: https://github.com/nextstrain/nextclade/issues

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