GSSplayground
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
How to download and setup GSSplayground
Open terminal and run command
git clone https://github.com/orangeSi/GSSplayground.git
git clone is used to create a copy or clone of GSSplayground repositories.
You pass git clone a repository URL. it supports a few different network protocols and corresponding URL formats.
Also you may download zip file with GSSplayground https://github.com/orangeSi/GSSplayground/archive/master.zip
Or simply clone GSSplayground with SSH
[email protected]:orangeSi/GSSplayground.git
If you have some problems with GSSplayground
You may open issue on GSSplayground support forum (system) here: https://github.com/orangeSi/GSSplayground/issuesSimilar to GSSplayground repositories
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