app-mriqc

Runs MRIQC pipeline (http://mriqc.readthedocs.io/en/stable/reports/smri.html) from Poldrack Lab on selected T1 anatomy.

How to download and setup app-mriqc

Open terminal and run command

git clone https://github.com/brainlife/app-mriqc.git

git clone is used to create a copy or clone of app-mriqc repositories. You pass git clone a repository URL.
it supports a few different network protocols and corresponding URL formats.

Also you may download zip file with app-mriqc https://github.com/brainlife/app-mriqc/archive/master.zip

Or simply clone app-mriqc with SSH

[email protected]:brainlife/app-mriqc.git

If you have some problems with app-mriqc

You may open issue on app-mriqc support forum (system) here: https://github.com/brainlife/app-mriqc/issues

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