OpenGene

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

Detect and visualize target mutations by scanning FastQ files directly

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

Gene fusion detection and visualization

An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

Pattern Recognition for Cell-free DNA

Generate unique KMERs for every contig in a FASTA file

A simplified pipeline for ctDNA sequencing data analysis

(No maintenance) Detect gene fusion directly from raw fastq files

(No maintenance) Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated