lh3

Incremental construction of FM-index for DNA sequences

A reimplementation of the WaveFront Alignment algorithm at low memory

Exact Tandem Repeat Finder (not a TRF replacement)

Interactive phylogenetic tree viewer/editor

Symmetric DUST for finding low-complexity regions in DNA sequences

For live demo, see http://lh3lh3.users.sourceforge.net/bioseq.shtml

An experimental tool to estimate the similarity between all pairs of contigs

Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang

Compute N50/NG50 and auN/auNG