9
Repos
524
Stars
45
Forks
524
Watchers
Repositories (9)
rasusa
mbhall88/rasusa
Rust
Randomly subsample sequencing reads or alignments
259
20
lrge
mbhall88/lrge
Rust
Genome size estimation from long read overlaps
81
4
nohuman
mbhall88/nohuman
Rust
Remove human reads from a sequencing run
48
4
compression_benchmark
mbhall88/compression_benchmark
Python
Benchmarking FASTQ compression with 'mature' compression algorithms
39
4
pafpy
mbhall88/pafpy
Python
A lightweight library for working with PAF (Pairwise mApping Format) files
30
3
ontime
mbhall88/ontime
Rust
Extract subsets of ONT (Nanopore) reads based on time
23
2
taeper
mbhall88/taeper
Python
A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.
18
0
container_recipes
mbhall88/container_recipes
Dockerfile
Repository with all my container recipes 👩🍳
13
5
streamformatics
mbhall88/streamformatics
JavaScript
Real-time species-typing visualisation for nanopore data.
13
3