ome

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.

OMERO Docker compose example

A repository containing scripts for managing infrastructure

cAdvisor container monitoring

Continuous integration tool for OME projects

Examples of usage of the Bio-Formats API

Playbooks used by the OME team for deploying production services including OMERO

Setup a cron job for regular full Mysql/Mariadb database dumps.

Test infrastructure for decoupled repositories

Status dashboard for the OME project

HTML-based presentations from the OME team.