sarek

containers bioinformatics

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

How to download and setup sarek

Open terminal and run command

git clone https://github.com/nf-core/sarek.git

git clone is used to create a copy or clone of sarek repositories. You pass git clone a repository URL.
it supports a few different network protocols and corresponding URL formats.

Also you may download zip file with sarek https://github.com/nf-core/sarek/archive/master.zip

Or simply clone sarek with SSH

[email protected]:nf-core/sarek.git

If you have some problems with sarek

You may open issue on sarek support forum (system) here: https://github.com/nf-core/sarek/issues

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