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scanpy

Single-cell analysis in Python. Scales to >1M cells.

How to download and setup scanpy

Open terminal and run command
git clone https://github.com/scverse/scanpy.git
git clone is used to create a copy or clone of scanpy repositories. You pass git clone a repository URL.
it supports a few different network protocols and corresponding URL formats.

Also you may download zip file with scanpy https://github.com/scverse/scanpy/archive/master.zip

Or simply clone scanpy with SSH
[email protected]:scverse/scanpy.git

If you have some problems with scanpy

You may open issue on scanpy support forum (system) here: https://github.com/scverse/scanpy/issues