FragPipe

gui search-engine

A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data

How to download and setup FragPipe

Open terminal and run command

git clone https://github.com/Nesvilab/FragPipe.git

git clone is used to create a copy or clone of FragPipe repositories. You pass git clone a repository URL.
it supports a few different network protocols and corresponding URL formats.

Also you may download zip file with FragPipe https://github.com/Nesvilab/FragPipe/archive/master.zip

Or simply clone FragPipe with SSH

[email protected]:Nesvilab/FragPipe.git

If you have some problems with FragPipe

You may open issue on FragPipe support forum (system) here: https://github.com/Nesvilab/FragPipe/issues

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