genome_updater

genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with advanced filters, detailed logs and reports, file integrity checks, NCBI taxonomy and GTDB integration and support for parallel downloads.

bioinformatics bash

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168 Stars

18 Forks

168 Watchers

Shell Language

mit License

100 SrcLog Score

Cost to Build

$66.4K

Market Value

$240.2K

How is this calculated?

Growth over time

7 data points · 2022-02-01 → 2026-04-01

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What is the pirovc/genome_updater GitHub project? Description: "genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with advanced filters, detailed logs and reports, file integrity checks, NCBI taxonomy and GTDB integration and support for parallel downloads.". Written in Shell. Explain what it does, its main use cases, key features, and who would benefit from using it.

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How to clone genome_updater

Clone via HTTPS

git clone https://github.com/pirovc/genome_updater.git

Clone via SSH

[email protected]:pirovc/genome_updater.git

Download ZIP

Download master.zip

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Report bugs or request features on the genome_updater issue tracker:

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