theislab

Single-cell analysis in Python. Scales to >100M cells.

https://www.sc-best-practices.org

Annotated data.

CellRank: dynamics from multi-view single-cell data. See the docs:

Single cell perturbation prediction

Differential expression analysis for single-cell RNA-seq data.

Conversion between scRNA-seq objects

A guide to using the Python scRNA-seq analysis package Scanpy from R

Tutorials and examples for CellRank.