Single-cell analysis in Python. Scales to >100M cells.
https://www.sc-best-practices.org
Annotated data.
CellRank: dynamics from multi-view single-cell data. See the docs:
Single cell perturbation prediction
Differential expression analysis for single-cell RNA-seq data.
Conversion between scRNA-seq objects
A guide to using the Python scRNA-seq analysis package Scanpy from R
Tutorials and examples for CellRank.