hantavirus-pipeline

consensus

Bioinformatics pipeline for processing Hantavirus NGS data with a two-pass approach. Implements quality control, reference-based mapping, metaconsensus refinement, variant calling, and automatic negative sample detection. Features include primer evaluation, coverage visualization, and comparison between consensus sequences.

How to download and setup hantavirus-pipeline

Open terminal and run command

git clone https://github.com/aleponce4/hantavirus-pipeline.git

git clone is used to create a copy or clone of hantavirus-pipeline repositories. You pass git clone a repository URL.
it supports a few different network protocols and corresponding URL formats.

Also you may download zip file with hantavirus-pipeline https://github.com/aleponce4/hantavirus-pipeline/archive/master.zip

Or simply clone hantavirus-pipeline with SSH

[email protected]:aleponce4/hantavirus-pipeline.git

If you have some problems with hantavirus-pipeline

You may open issue on hantavirus-pipeline support forum (system) here: https://github.com/aleponce4/hantavirus-pipeline/issues

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