aquaskyline

Next generation sequencing reads de novo assembler.

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

10x Genomics Reads Simulator

An Artificial Neural Network-based discriminator for validating clinically significant genomic variants

SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome datasets from rice and mouse.

To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be configured to favor speed in trade of accuracy and sensitivity. SOAP3-dp, through leveraging the computational power of both CPU and GPU with optimized algorithms, delivers high speed and sensitivity simultaneously.

Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model