SOAPdenovo-Trans

bioinformatics

SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome datasets from rice and mouse.

How to download and setup SOAPdenovo-Trans

Open terminal and run command

git clone https://github.com/aquaskyline/SOAPdenovo-Trans.git

git clone is used to create a copy or clone of SOAPdenovo-Trans repositories. You pass git clone a repository URL.
it supports a few different network protocols and corresponding URL formats.

Also you may download zip file with SOAPdenovo-Trans https://github.com/aquaskyline/SOAPdenovo-Trans/archive/master.zip

Or simply clone SOAPdenovo-Trans with SSH

[email protected]:aquaskyline/SOAPdenovo-Trans.git

If you have some problems with SOAPdenovo-Trans

You may open issue on SOAPdenovo-Trans support forum (system) here: https://github.com/aquaskyline/SOAPdenovo-Trans/issues

Similar to SOAPdenovo-Trans repositories

Here you may see SOAPdenovo-Trans alternatives and analogs

cs-video-courses fastp dash deepvariant awesome-single-cell nextflow bwa khmer Awesome-Bioinformatics galaxy gatk seqtk bioconda-recipes MultiQC hail minimap2 scipipe nucleus bioawk cromwell vsearch sambamba jbrowse bionode csvtk biojava deepTools circosJS containers salmon