SOAP3-dp
To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be configured to favor speed in trade of accuracy and sensitivity. SOAP3-dp, through leveraging the computational power of both CPU and GPU with optimized algorithms, delivers high speed and sensitivity simultaneously.
How to download and setup SOAP3-dp
Open terminal and run command
git clone https://github.com/aquaskyline/SOAP3-dp.git
git clone is used to create a copy or clone of SOAP3-dp repositories.
You pass git clone a repository URL. it supports a few different network protocols and corresponding URL formats.
Also you may download zip file with SOAP3-dp https://github.com/aquaskyline/SOAP3-dp/archive/master.zip
Or simply clone SOAP3-dp with SSH
[email protected]:aquaskyline/SOAP3-dp.git
If you have some problems with SOAP3-dp
You may open issue on SOAP3-dp support forum (system) here: https://github.com/aquaskyline/SOAP3-dp/issuesSimilar to SOAP3-dp repositories
Here you may see SOAP3-dp alternatives and analogs
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