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Repositories (10)
gatk
broadinstitute/gatk
Java
Official code repository for GATK versions 4 and up
2k
625
cromwell
broadinstitute/cromwell
Scala
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
1.1k
382
keras-rcnn
broadinstitute/keras-rcnn
Python
Keras package for region-based convolutional neural networks (RCNNs)
553
218
keras-resnet
broadinstitute/keras-resnet
Python
Keras package for deep residual networks
302
122
gatk-sv
broadinstitute/gatk-sv
Python
A structural variation pipeline for short-read sequencing
205
81
viral-ngs
broadinstitute/viral-ngs
Python
viral-ngs: command line tools and wrappers for processing raw viral genomic data
198
67
catch
broadinstitute/catch
Python
A package for designing compact and comprehensive capture probe sets.
100
16
cromshell
broadinstitute/cromshell
Python
CLI for interacting with Cromwell servers
54
15
wdl-ide
broadinstitute/wdl-ide
Python
Rich IDE support for Workflow Description Language
27
8
homebrew-dsp
broadinstitute/homebrew-dsp
Ruby
A brew tap for tools and formula that DSP uses that aren't ready for publishing to homebrew-core
4
0