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gatk

Official code repository for GATK versions 4 and up

How to download and setup gatk

Open terminal and run command
git clone https://github.com/broadinstitute/gatk.git
git clone is used to create a copy or clone of gatk repositories. You pass git clone a repository URL.
it supports a few different network protocols and corresponding URL formats.

Also you may download zip file with gatk https://github.com/broadinstitute/gatk/archive/master.zip

Or simply clone gatk with SSH
[email protected]:broadinstitute/gatk.git

If you have some problems with gatk

You may open issue on gatk support forum (system) here: https://github.com/broadinstitute/gatk/issues

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