taxonkit

cross-platform bioinformatics

A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

How to download and setup taxonkit

Open terminal and run command

git clone https://github.com/shenwei356/taxonkit.git

git clone is used to create a copy or clone of taxonkit repositories. You pass git clone a repository URL.
it supports a few different network protocols and corresponding URL formats.

Also you may download zip file with taxonkit https://github.com/shenwei356/taxonkit/archive/master.zip

Or simply clone taxonkit with SSH

[email protected]:shenwei356/taxonkit.git

If you have some problems with taxonkit

You may open issue on taxonkit support forum (system) here: https://github.com/shenwei356/taxonkit/issues

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