BLEND

bioinformatics

BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applications: 1) finding overlapping reads and 2) read mapping. Described by Firtina et al. (published in NARGAB https://doi.org/10.1093/nargab/lqad004)

How to download and setup BLEND

Open terminal and run command

git clone https://github.com/CMU-SAFARI/BLEND.git

git clone is used to create a copy or clone of BLEND repositories. You pass git clone a repository URL.
it supports a few different network protocols and corresponding URL formats.

Also you may download zip file with BLEND https://github.com/CMU-SAFARI/BLEND/archive/master.zip

Or simply clone BLEND with SSH

[email protected]:CMU-SAFARI/BLEND.git

If you have some problems with BLEND

You may open issue on BLEND support forum (system) here: https://github.com/CMU-SAFARI/BLEND/issues

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