BLEND

BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applications: 1) finding overlapping reads and 2) read mapping. Described by Firtina et al. (published in NARGAB https://doi.org/10.1093/nargab/lqad004)

bioinformatics

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47 Stars

5 Forks

47 Watchers

C Language

other License

100 SrcLog Score

Cost to Build

$1.43M

Market Value

$1.91M

How is this calculated?

Growth over time

2 data points · 2023-07-01 → 2026-04-01

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What is the CMU-SAFARI/BLEND GitHub project? Description: "BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applications: 1) finding overlapping reads and 2) read mapping. Described by Firtina et al. (published in NARGAB https://doi.org/10.1093/nargab/lqad004)". Written in C. Explain what it does, its main use cases, key features, and who would benefit from using it.

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How to clone BLEND

Clone via HTTPS

git clone https://github.com/CMU-SAFARI/BLEND.git

Clone via SSH

[email protected]:CMU-SAFARI/BLEND.git

Download ZIP

Download master.zip

Found an issue?

Report bugs or request features on the BLEND issue tracker:

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