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TOGA

TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

How to download and setup TOGA

Open terminal and run command
git clone https://github.com/hillerlab/TOGA.git
git clone is used to create a copy or clone of TOGA repositories. You pass git clone a repository URL.
it supports a few different network protocols and corresponding URL formats.

Also you may download zip file with TOGA https://github.com/hillerlab/TOGA/archive/master.zip

Or simply clone TOGA with SSH
[email protected]:hillerlab/TOGA.git

If you have some problems with TOGA

You may open issue on TOGA support forum (system) here: https://github.com/hillerlab/TOGA/issues

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