dnaPipeTE

dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).

bioinformatics

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60 Stars

11 Forks

60 Watchers

Dockerfile Language

100 SrcLog Score

Cost to Build

$47.20M

Market Value

$69.67M

How is this calculated?

Growth over time

3 data points · 2023-02-01 → 2026-04-01

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What is the clemgoub/dnaPipeTE GitHub project? Description: "dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).". Written in Dockerfile. Explain what it does, its main use cases, key features, and who would benefit from using it.

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How to clone dnaPipeTE

Clone via HTTPS

git clone https://github.com/clemgoub/dnaPipeTE.git

Clone via SSH

[email protected]:clemgoub/dnaPipeTE.git

Download ZIP

Download master.zip

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