dnaPipeTE

bioinformatics

dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).

How to download and setup dnaPipeTE

Open terminal and run command

git clone https://github.com/clemgoub/dnaPipeTE.git

git clone is used to create a copy or clone of dnaPipeTE repositories. You pass git clone a repository URL.
it supports a few different network protocols and corresponding URL formats.

Also you may download zip file with dnaPipeTE https://github.com/clemgoub/dnaPipeTE/archive/master.zip

Or simply clone dnaPipeTE with SSH

[email protected]:clemgoub/dnaPipeTE.git

If you have some problems with dnaPipeTE

You may open issue on dnaPipeTE support forum (system) here: https://github.com/clemgoub/dnaPipeTE/issues

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