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Repositories (5)
pairix
4dn-dcic/pairix
C
1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates
71
12
tibanna
4dn-dcic/tibanna
Python
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
68
22
docker-4dn-hic
4dn-dcic/docker-4dn-hic
Common Workflow Language
Docker for 4DN Hi-C processing pipeline
49
15
hic2cool
4dn-dcic/hic2cool
Python
Lightweight converter between hic and cool contact matrices.
48
6
pairsqc
4dn-dcic/pairsqc
HTML
QC report generator for Hi-C pairs file
10
2