pairix

bioinformatics

1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates

How to download and setup pairix

Open terminal and run command

git clone https://github.com/4dn-dcic/pairix.git

git clone is used to create a copy or clone of pairix repositories. You pass git clone a repository URL.
it supports a few different network protocols and corresponding URL formats.

Also you may download zip file with pairix https://github.com/4dn-dcic/pairix/archive/master.zip

Or simply clone pairix with SSH

[email protected]:4dn-dcic/pairix.git

If you have some problems with pairix

You may open issue on pairix support forum (system) here: https://github.com/4dn-dcic/pairix/issues

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