Repositories (13)
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Python package with helper tools for the nf-core community.
Repository to host tool-specific module files for the Nextflow DSL2 community!
Assembly and binning of metagenomes
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Config files used to define parameters specific to compute environments at different Institutions
Highly parallelised multi-taxonomic profiling of shotgun and long-read metagenomic data
(Meta-)genome screening for functional and natural product gene sequences
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
DEPRECIATED! Please use nf-core/tools instead
Now replaced with a new website >>>