Repositories (16)
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Repository to host tool-specific module files for the Nextflow DSL2 community!
Python package with helper tools for the nf-core community.
Assembly and binning of metagenomes
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Config files used to define parameters specific to compute environments at different Institutions
(Meta-)genome screening for functional and natural product gene sequences
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
DEPRECIATED! Please use nf-core/tools instead
Now replaced with a new website >>>
Spelling and grammar linting for nf-core documentation