spatialvi
nf-core
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
74
Stars
35
Forks
74
Watchers
Nextflow
Language
mit
License
100
SrcLog Score
Growth over time
3 data points · 2026-04-09 → 2026-04-23
Stars
Forks
Watchers
💬
How do you feel about this project?
Ask AI about spatialvi
Question copied to clipboardWhat is the nf-core/spatialvi GitHub project? Description: "Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.". Written in Nextflow. Explain what it does, its main use cases, key features, and who would benefit from using it.
Question is copied to clipboard — paste it after the AI opens.
How to clone spatialvi
Clone via HTTPS
git clone https://github.com/nf-core/spatialvi.git
Clone via SSH
[email protected]:nf-core/spatialvi.git
Download ZIP
Download master.zipFound an issue?
Report bugs or request features on the spatialvi issue tracker:
Open GitHub Issues