How to download and setup megahit
Open terminal and run command
git clone https://github.com/voutcn/megahit.git
git clone is used to create a copy or clone of megahit repositories.
You pass git clone a repository URL. it supports a few different network protocols and corresponding URL formats.
Also you may download zip file with megahit https://github.com/voutcn/megahit/archive/master.zip
Or simply clone megahit with SSH
[email protected]:voutcn/megahit.git
If you have some problems with megahit
You may open issue on megahit support forum (system) here: https://github.com/voutcn/megahit/issuesSimilar to megahit repositories
Here you may see megahit alternatives and analogs
cs-video-courses fastp dash deepvariant awesome-single-cell nextflow bwa khmer Awesome-Bioinformatics galaxy gatk seqtk bioconda-recipes MultiQC hail minimap2 scipipe nucleus bioawk cromwell vsearch sambamba jbrowse bionode csvtk biojava deepTools circosJS containers salmon