workflows

bioinformatics

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

How to download and setup workflows

Open terminal and run command

git clone https://github.com/stjudecloud/workflows.git

git clone is used to create a copy or clone of workflows repositories. You pass git clone a repository URL.
it supports a few different network protocols and corresponding URL formats.

Also you may download zip file with workflows https://github.com/stjudecloud/workflows/archive/master.zip

Or simply clone workflows with SSH

[email protected]:stjudecloud/workflows.git

If you have some problems with workflows

You may open issue on workflows support forum (system) here: https://github.com/stjudecloud/workflows/issues

Similar to workflows repositories

Here you may see workflows alternatives and analogs

cs-video-courses fastp dash deepvariant awesome-single-cell nextflow bwa khmer Awesome-Bioinformatics galaxy gatk seqtk bioconda-recipes MultiQC hail minimap2 scipipe nucleus bioawk cromwell vsearch sambamba jbrowse bionode csvtk biojava deepTools circosJS containers salmon