sv-pipeline

bioinformatics

Pipeline for structural variation detection in cohorts

How to download and setup sv-pipeline

Open terminal and run command

git clone https://github.com/hall-lab/sv-pipeline.git

git clone is used to create a copy or clone of sv-pipeline repositories. You pass git clone a repository URL.
it supports a few different network protocols and corresponding URL formats.

Also you may download zip file with sv-pipeline https://github.com/hall-lab/sv-pipeline/archive/master.zip

Or simply clone sv-pipeline with SSH

[email protected]:hall-lab/sv-pipeline.git

If you have some problems with sv-pipeline

You may open issue on sv-pipeline support forum (system) here: https://github.com/hall-lab/sv-pipeline/issues

Similar to sv-pipeline repositories

Here you may see sv-pipeline alternatives and analogs

cs-video-courses fastp dash deepvariant awesome-single-cell nextflow bwa khmer Awesome-Bioinformatics galaxy gatk seqtk bioconda-recipes MultiQC hail minimap2 scipipe nucleus bioawk cromwell vsearch sambamba jbrowse bionode csvtk biojava deepTools circosJS containers salmon