CNApy
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
How to download and setup CNApy
Open terminal and run command
git clone https://github.com/cnapy-org/CNApy.git
git clone is used to create a copy or clone of CNApy repositories.
You pass git clone a repository URL. it supports a few different network protocols and corresponding URL formats.
Also you may download zip file with CNApy https://github.com/cnapy-org/CNApy/archive/master.zip
Or simply clone CNApy with SSH
[email protected]:cnapy-org/CNApy.git
If you have some problems with CNApy
You may open issue on CNApy support forum (system) here: https://github.com/cnapy-org/CNApy/issuesSimilar to CNApy repositories
Here you may see CNApy alternatives and analogs
cs-video-courses fastp dash deepvariant awesome-single-cell nextflow bwa khmer Awesome-Bioinformatics galaxy gatk seqtk bioconda-recipes MultiQC hail minimap2 scipipe nucleus bioawk cromwell vsearch sambamba jbrowse bionode csvtk biojava deepTools circosJS containers salmon