DeepSpot

DeepSpot: Deep learning model for predicting spatial transcriptomics from H&E histopathology images. Supports spot-level (Visium) and single-cell (Xenium) resolution.

bioinformatics

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66 Stars

18 Forks

66 Watchers

Jupyter Notebook Language

mit License

100 SrcLog Score

Cost to Build

$135.9K

Market Value

$422.7K

How is this calculated?

Growth over time

3 data points · 2026-04-09 → 2026-04-23

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What is the ratschlab/DeepSpot GitHub project? Description: "DeepSpot: Deep learning model for predicting spatial transcriptomics from H&E histopathology images. Supports spot-level (Visium) and single-cell (Xenium) resolution.". Written in Jupyter Notebook. Explain what it does, its main use cases, key features, and who would benefit from using it.

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How to clone DeepSpot

Clone via HTTPS

git clone https://github.com/ratschlab/DeepSpot.git

Clone via SSH

[email protected]:ratschlab/DeepSpot.git

Download ZIP

Download master.zip

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Report bugs or request features on the DeepSpot issue tracker:

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