GraffiTE

GraffiTE

cgroza

GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.

bioinformatics
View on GitHub
278 Stars
17 Forks
5 Watchers
Python Language
other License
100 SrcLog Score
Cost to Build
$5.52M
Market Value
$19.76M
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Growth over time

8 data points  ·  2023-02-01 → 2026-11-01
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What is the cgroza/GraffiTE GitHub project? Description: "GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.". Written in Python. Explain what it does, its main use cases, key features, and who would benefit from using it.

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How to clone GraffiTE

Clone via HTTPS

git clone https://github.com/cgroza/GraffiTE.git

Clone via SSH

[email protected]:cgroza/GraffiTE.git

Download ZIP

Download main.zip

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