GraffiTE

GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.

bioinformatics

View on GitHub

268 Stars

16 Forks

4 Watchers

R Language

other License

100 SrcLog Score

Cost to Build

$1.64M

Market Value

$5.81M

How is this calculated?

Growth over time

4 data points · 2023-02-01 → 2026-07-01

Stars Forks Watchers

💬

How do you feel about this project?

Ask AI about GraffiTE

Question copied to clipboard

What is the cgroza/GraffiTE GitHub project? Description: "GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.". Written in R. Explain what it does, its main use cases, key features, and who would benefit from using it.

Question is copied to clipboard — paste it after the AI opens.

How to clone GraffiTE

Clone via HTTPS

git clone https://github.com/cgroza/GraffiTE.git

Clone via SSH

[email protected]:cgroza/GraffiTE.git

Download ZIP

Download main.zip

Found an issue?

Report bugs or request features on the GraffiTE issue tracker:

Open GitHub Issues

Similar to GraffiTE

cs-video-courses dash deepvariant awesome-single-cell nextflow bwa khmer Awesome-Bioinformatics galaxy gatk seqtk bioconda-recipes MultiQC hail minimap2 scipipe nucleus bioawk cromwell vsearch fastp sambamba jbrowse bionode csvtk biojava deepTools circosJS containers salmon