PyDESeq2

scverse

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

bioinformatics

View on GitHub Website

748 Stars

83 Forks

748 Watchers

Python Language

mit License

100 SrcLog Score

Cost to Build

$60.3K

Market Value

$288.4K

How is this calculated?

Growth over time

3 data points · 2023-02-01 → 2026-04-01

Stars Forks Watchers

💬

How do you feel about this project?

Ask AI about PyDESeq2

Question copied to clipboard

What is the scverse/PyDESeq2 GitHub project? Description: "A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.". Written in Python. Explain what it does, its main use cases, key features, and who would benefit from using it.

Question is copied to clipboard — paste it after the AI opens.

How to clone PyDESeq2

Clone via HTTPS

git clone https://github.com/scverse/PyDESeq2.git

Clone via SSH

[email protected]:scverse/PyDESeq2.git

Download ZIP

Download master.zip

Found an issue?

Report bugs or request features on the PyDESeq2 issue tracker:

Open GitHub Issues

Similar to PyDESeq2

cs-video-courses dash deepvariant awesome-single-cell nextflow bwa khmer Awesome-Bioinformatics galaxy gatk seqtk bioconda-recipes MultiQC hail minimap2 scipipe nucleus bioawk cromwell vsearch fastp sambamba jbrowse bionode csvtk biojava deepTools circosJS containers salmon