SigProfilerExtractor
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
How to download and setup SigProfilerExtractor
Open terminal and run command
git clone https://github.com/AlexandrovLab/SigProfilerExtractor.git
git clone is used to create a copy or clone of SigProfilerExtractor repositories.
You pass git clone a repository URL. it supports a few different network protocols and corresponding URL formats.
Also you may download zip file with SigProfilerExtractor https://github.com/AlexandrovLab/SigProfilerExtractor/archive/master.zip
Or simply clone SigProfilerExtractor with SSH
[email protected]:AlexandrovLab/SigProfilerExtractor.git
If you have some problems with SigProfilerExtractor
You may open issue on SigProfilerExtractor support forum (system) here: https://github.com/AlexandrovLab/SigProfilerExtractor/issuesSimilar to SigProfilerExtractor repositories
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