SigProfilerMatrixGenerator
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
How to download and setup SigProfilerMatrixGenerator
Open terminal and run command
git clone https://github.com/AlexandrovLab/SigProfilerMatrixGenerator.git
git clone is used to create a copy or clone of SigProfilerMatrixGenerator repositories.
You pass git clone a repository URL. it supports a few different network protocols and corresponding URL formats.
Also you may download zip file with SigProfilerMatrixGenerator https://github.com/AlexandrovLab/SigProfilerMatrixGenerator/archive/master.zip
Or simply clone SigProfilerMatrixGenerator with SSH
[email protected]:AlexandrovLab/SigProfilerMatrixGenerator.git
If you have some problems with SigProfilerMatrixGenerator
You may open issue on SigProfilerMatrixGenerator support forum (system) here: https://github.com/AlexandrovLab/SigProfilerMatrixGenerator/issuesSimilar to SigProfilerMatrixGenerator repositories
Here you may see SigProfilerMatrixGenerator alternatives and analogs
cs-video-courses fastp dash deepvariant awesome-single-cell nextflow bwa khmer Awesome-Bioinformatics galaxy gatk seqtk bioconda-recipes MultiQC hail minimap2 scipipe nucleus bioawk cromwell vsearch sambamba jbrowse bionode csvtk biojava deepTools circosJS containers salmon