34 Forks
108 Stars
108 Watchers

V-pipe

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

How to download and setup V-pipe

Open terminal and run command
git clone https://github.com/cbg-ethz/V-pipe.git
git clone is used to create a copy or clone of V-pipe repositories. You pass git clone a repository URL.
it supports a few different network protocols and corresponding URL formats.

Also you may download zip file with V-pipe https://github.com/cbg-ethz/V-pipe/archive/master.zip

Or simply clone V-pipe with SSH
[email protected]:cbg-ethz/V-pipe.git

If you have some problems with V-pipe

You may open issue on V-pipe support forum (system) here: https://github.com/cbg-ethz/V-pipe/issues

Similar to V-pipe repositories

Here you may see V-pipe alternatives and analogs

 cs-video-courses    fastp    dash    deepvariant    awesome-single-cell    nextflow    bwa    khmer    Awesome-Bioinformatics    galaxy    gatk    seqtk    bioconda-recipes    MultiQC    hail    minimap2    scipipe    nucleus    bioawk    cromwell    vsearch    sambamba    jbrowse    bionode    csvtk    biojava    deepTools    circosJS    containers    salmon