Wochenende
Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
How to download and setup Wochenende
Open terminal and run command
git clone https://github.com/MHH-RCUG/Wochenende.git
git clone is used to create a copy or clone of Wochenende repositories.
You pass git clone a repository URL. it supports a few different network protocols and corresponding URL formats.
Also you may download zip file with Wochenende https://github.com/MHH-RCUG/Wochenende/archive/master.zip
Or simply clone Wochenende with SSH
[email protected]:MHH-RCUG/Wochenende.git
If you have some problems with Wochenende
You may open issue on Wochenende support forum (system) here: https://github.com/MHH-RCUG/Wochenende/issuesSimilar to Wochenende repositories
Here you may see Wochenende alternatives and analogs
cs-video-courses fastp dash deepvariant awesome-single-cell nextflow bwa khmer Awesome-Bioinformatics galaxy gatk seqtk bioconda-recipes MultiQC hail minimap2 scipipe nucleus bioawk cromwell vsearch sambamba jbrowse bionode csvtk biojava deepTools circosJS containers salmon