How to download and setup bwa-mem2
Open terminal and run command
git clone https://github.com/bwa-mem2/bwa-mem2.git
git clone is used to create a copy or clone of bwa-mem2 repositories.
You pass git clone a repository URL. it supports a few different network protocols and corresponding URL formats.
Also you may download zip file with bwa-mem2 https://github.com/bwa-mem2/bwa-mem2/archive/master.zip
Or simply clone bwa-mem2 with SSH
[email protected]:bwa-mem2/bwa-mem2.git
If you have some problems with bwa-mem2
You may open issue on bwa-mem2 support forum (system) here: https://github.com/bwa-mem2/bwa-mem2/issuesSimilar to bwa-mem2 repositories
Here you may see bwa-mem2 alternatives and analogs
cs-video-courses fastp dash deepvariant awesome-single-cell nextflow bwa khmer Awesome-Bioinformatics galaxy gatk seqtk bioconda-recipes MultiQC hail minimap2 scipipe nucleus bioawk cromwell vsearch sambamba jbrowse bionode csvtk biojava deepTools circosJS containers salmon