How to download and setup cogent3
Open terminal and run command
git clone https://github.com/cogent3/cogent3.git
git clone is used to create a copy or clone of cogent3 repositories.
You pass git clone a repository URL. it supports a few different network protocols and corresponding URL formats.
Also you may download zip file with cogent3 https://github.com/cogent3/cogent3/archive/master.zip
Or simply clone cogent3 with SSH
[email protected]:cogent3/cogent3.git
If you have some problems with cogent3
You may open issue on cogent3 support forum (system) here: https://github.com/cogent3/cogent3/issuesSimilar to cogent3 repositories
Here you may see cogent3 alternatives and analogs
cs-video-courses fastp dash deepvariant awesome-single-cell nextflow bwa khmer Awesome-Bioinformatics galaxy gatk seqtk bioconda-recipes MultiQC hail minimap2 scipipe nucleus bioawk cromwell vsearch sambamba jbrowse bionode csvtk biojava deepTools circosJS containers salmon