genome_collector

bioinformatics

:stars: Easily download genomes and build BLAST/Bowtie indexes in Python

How to download and setup genome_collector

Open terminal and run command

git clone https://github.com/Edinburgh-Genome-Foundry/genome_collector.git

git clone is used to create a copy or clone of genome_collector repositories. You pass git clone a repository URL.
it supports a few different network protocols and corresponding URL formats.

Also you may download zip file with genome_collector https://github.com/Edinburgh-Genome-Foundry/genome_collector/archive/master.zip

Or simply clone genome_collector with SSH

[email protected]:Edinburgh-Genome-Foundry/genome_collector.git

If you have some problems with genome_collector

You may open issue on genome_collector support forum (system) here: https://github.com/Edinburgh-Genome-Foundry/genome_collector/issues

Similar to genome_collector repositories

Here you may see genome_collector alternatives and analogs

cs-video-courses fastp dash deepvariant awesome-single-cell nextflow bwa khmer Awesome-Bioinformatics galaxy gatk seqtk bioconda-recipes MultiQC hail minimap2 scipipe nucleus bioawk cromwell vsearch sambamba jbrowse bionode csvtk biojava deepTools circosJS containers salmon