covid19

bioinformatics

🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.

How to download and setup covid19

Open terminal and run command

git clone https://github.com/immunomind/covid19.git

git clone is used to create a copy or clone of covid19 repositories. You pass git clone a repository URL.
it supports a few different network protocols and corresponding URL formats.

Also you may download zip file with covid19 https://github.com/immunomind/covid19/archive/master.zip

Or simply clone covid19 with SSH

[email protected]:immunomind/covid19.git

If you have some problems with covid19

You may open issue on covid19 support forum (system) here: https://github.com/immunomind/covid19/issues

Similar to covid19 repositories

Here you may see covid19 alternatives and analogs

cs-video-courses fastp dash deepvariant awesome-single-cell nextflow bwa khmer Awesome-Bioinformatics galaxy gatk seqtk bioconda-recipes MultiQC hail minimap2 scipipe nucleus bioawk cromwell vsearch sambamba jbrowse bionode csvtk biojava deepTools circosJS containers salmon