How to download and setup jvarkit
Open terminal and run command
git clone https://github.com/lindenb/jvarkit.git
git clone is used to create a copy or clone of jvarkit repositories.
You pass git clone a repository URL. it supports a few different network protocols and corresponding URL formats.
Also you may download zip file with jvarkit https://github.com/lindenb/jvarkit/archive/master.zip
Or simply clone jvarkit with SSH
[email protected]:lindenb/jvarkit.git
If you have some problems with jvarkit
You may open issue on jvarkit support forum (system) here: https://github.com/lindenb/jvarkit/issuesSimilar to jvarkit repositories
Here you may see jvarkit alternatives and analogs
cs-video-courses fastp dash deepvariant awesome-single-cell nextflow bwa khmer Awesome-Bioinformatics galaxy gatk seqtk bioconda-recipes MultiQC hail minimap2 scipipe nucleus bioawk cromwell vsearch sambamba jbrowse bionode csvtk biojava deepTools circosJS containers salmon