scarf

bioinformatics

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

How to download and setup scarf

Open terminal and run command

git clone https://github.com/parashardhapola/scarf.git

git clone is used to create a copy or clone of scarf repositories. You pass git clone a repository URL.
it supports a few different network protocols and corresponding URL formats.

Also you may download zip file with scarf https://github.com/parashardhapola/scarf/archive/master.zip

Or simply clone scarf with SSH

[email protected]:parashardhapola/scarf.git

If you have some problems with scarf

You may open issue on scarf support forum (system) here: https://github.com/parashardhapola/scarf/issues

Similar to scarf repositories

Here you may see scarf alternatives and analogs

cs-video-courses fastp dash deepvariant awesome-single-cell nextflow bwa khmer Awesome-Bioinformatics galaxy gatk seqtk bioconda-recipes MultiQC hail minimap2 scipipe nucleus bioawk cromwell vsearch sambamba jbrowse bionode csvtk biojava deepTools circosJS containers salmon