partie

bioinformatics

PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE allows automatic separation of the data.

How to download and setup partie

Open terminal and run command

git clone https://github.com/linsalrob/partie.git

git clone is used to create a copy or clone of partie repositories. You pass git clone a repository URL.
it supports a few different network protocols and corresponding URL formats.

Also you may download zip file with partie https://github.com/linsalrob/partie/archive/master.zip

Or simply clone partie with SSH

[email protected]:linsalrob/partie.git

If you have some problems with partie

You may open issue on partie support forum (system) here: https://github.com/linsalrob/partie/issues

Similar to partie repositories

Here you may see partie alternatives and analogs

cs-video-courses fastp dash deepvariant awesome-single-cell nextflow bwa khmer Awesome-Bioinformatics galaxy gatk seqtk bioconda-recipes MultiQC hail minimap2 scipipe nucleus bioawk cromwell vsearch sambamba jbrowse bionode csvtk biojava deepTools circosJS containers salmon