pyfastx

bioinformatics

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

How to download and setup pyfastx

Open terminal and run command

git clone https://github.com/lmdu/pyfastx.git

git clone is used to create a copy or clone of pyfastx repositories. You pass git clone a repository URL.
it supports a few different network protocols and corresponding URL formats.

Also you may download zip file with pyfastx https://github.com/lmdu/pyfastx/archive/master.zip

Or simply clone pyfastx with SSH

[email protected]:lmdu/pyfastx.git

If you have some problems with pyfastx

You may open issue on pyfastx support forum (system) here: https://github.com/lmdu/pyfastx/issues

Similar to pyfastx repositories

Here you may see pyfastx alternatives and analogs

cs-video-courses fastp dash deepvariant awesome-single-cell nextflow bwa khmer Awesome-Bioinformatics galaxy gatk seqtk bioconda-recipes MultiQC hail minimap2 scipipe nucleus bioawk cromwell vsearch sambamba jbrowse bionode csvtk biojava deepTools circosJS containers salmon