vargeno
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
How to download and setup vargeno
Open terminal and run command
git clone https://github.com/medvedevgroup/vargeno.git
git clone is used to create a copy or clone of vargeno repositories.
You pass git clone a repository URL. it supports a few different network protocols and corresponding URL formats.
Also you may download zip file with vargeno https://github.com/medvedevgroup/vargeno/archive/master.zip
Or simply clone vargeno with SSH
[email protected]:medvedevgroup/vargeno.git
If you have some problems with vargeno
You may open issue on vargeno support forum (system) here: https://github.com/medvedevgroup/vargeno/issuesSimilar to vargeno repositories
Here you may see vargeno alternatives and analogs
cs-video-courses fastp dash deepvariant awesome-single-cell nextflow bwa khmer Awesome-Bioinformatics galaxy gatk seqtk bioconda-recipes MultiQC hail minimap2 scipipe nucleus bioawk cromwell vsearch sambamba jbrowse bionode csvtk biojava deepTools circosJS containers salmon