variant-calling-pipeline-gatk4

bioinformatics

Variant Calling Pipeline Using GATK4 and Nextflow

How to download and setup variant-calling-pipeline-gatk4

Open terminal and run command

git clone https://github.com/gencorefacility/variant-calling-pipeline-gatk4.git

git clone is used to create a copy or clone of variant-calling-pipeline-gatk4 repositories. You pass git clone a repository URL.
it supports a few different network protocols and corresponding URL formats.

Also you may download zip file with variant-calling-pipeline-gatk4 https://github.com/gencorefacility/variant-calling-pipeline-gatk4/archive/master.zip

Or simply clone variant-calling-pipeline-gatk4 with SSH

[email protected]:gencorefacility/variant-calling-pipeline-gatk4.git

If you have some problems with variant-calling-pipeline-gatk4

You may open issue on variant-calling-pipeline-gatk4 support forum (system) here: https://github.com/gencorefacility/variant-calling-pipeline-gatk4/issues

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