How to download and setup ariba
Open terminal and run command
git clone https://github.com/sanger-pathogens/ariba.git
git clone is used to create a copy or clone of ariba repositories.
You pass git clone a repository URL. it supports a few different network protocols and corresponding URL formats.
Also you may download zip file with ariba https://github.com/sanger-pathogens/ariba/archive/master.zip
Or simply clone ariba with SSH
[email protected]:sanger-pathogens/ariba.git
If you have some problems with ariba
You may open issue on ariba support forum (system) here: https://github.com/sanger-pathogens/ariba/issuesSimilar to ariba repositories
Here you may see ariba alternatives and analogs
cs-video-courses fastp dash deepvariant awesome-single-cell nextflow bwa khmer Awesome-Bioinformatics galaxy gatk seqtk bioconda-recipes MultiQC hail minimap2 scipipe nucleus bioawk cromwell vsearch sambamba jbrowse bionode csvtk biojava deepTools circosJS containers salmon