Repositories (16)
Rapid large-scale prokaryote pan genome analysis
Finds SNP sites from a multi-FASTA alignment file
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
A tool to circularize genome assemblies
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Antimicrobial Resistance Identification By Assembly
Get assembly statistics from FASTA and FASTQ files
Python3 scripts to manipulate FASTA and FASTQ files
de novo virus assembler of Illumina paired reads
Improve the quality of a denovo assembly by scaffolding and gap filling
Assembling the cause of phenotypes and genotypes from NGS data
Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
Multilocus sequence typing by blast using the schemes from PubMLST
This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion
SaffronTree: Reference free rapid phylogenetic tree construction from raw read data