saffrontree
SaffronTree: Reference free rapid phylogenetic tree construction from raw read data
How to download and setup saffrontree
Open terminal and run command
git clone https://github.com/sanger-pathogens/saffrontree.git
git clone is used to create a copy or clone of saffrontree repositories.
You pass git clone a repository URL. it supports a few different network protocols and corresponding URL formats.
Also you may download zip file with saffrontree https://github.com/sanger-pathogens/saffrontree/archive/master.zip
Or simply clone saffrontree with SSH
[email protected]:sanger-pathogens/saffrontree.git
If you have some problems with saffrontree
You may open issue on saffrontree support forum (system) here: https://github.com/sanger-pathogens/saffrontree/issuesSimilar to saffrontree repositories
Here you may see saffrontree alternatives and analogs
cs-video-courses fastp dash deepvariant awesome-single-cell nextflow bwa khmer Awesome-Bioinformatics galaxy gatk seqtk bioconda-recipes MultiQC hail minimap2 scipipe nucleus bioawk cromwell vsearch sambamba jbrowse bionode csvtk biojava deepTools circosJS containers salmon